PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT07371
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 333aa    MW: 36603.5 Da    PI: 6.099
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT07371genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.81.7e-5261341128
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
               lppGfrFhPtd+elv +yLk++v++ k+el evi+ +d+yk+ePw+Lp k  + +++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd++v + + ++
  EMT07371   6 LPPGFRFHPTDDELVGYYLKRRVDNLKIEL-EVIPVIDLYKCEPWELPeKsFLPKRDLEWFFFVPRDRKYPNGSRTNRATTTGYWKATGKDRKVSCDGAAV 105
               79****************************.99**************95334445667**************************************9999* PP

       NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                g++ktLvfykgrap ge+tdWvmheyrl
  EMT07371 106 CGVRKTLVFYKGRAPGGERTDWVMHEYRL 134
               ***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-593156IPR003441NAC domain
PROSITE profilePS5100556.6326157IPR003441NAC domain
PfamPF023652.3E-287134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGTMILPPGF RFHPTDDELV GYYLKRRVDN LKIELEVIPV IDLYKCEPWE LPEKSFLPKR  60
DLEWFFFVPR DRKYPNGSRT NRATTTGYWK ATGKDRKVSC DGAAVCGVRK TLVFYKGRAP  120
GGERTDWVMH EYRLCQDLLH GASNFIGAYA LCRVIKRTEA GLLHGDAAAK ARPGHQQMSK  180
VGSSSSLVTT DQQLSSLTPS PPRLDIVGNA FQLHSSPSPL YGGEVVSGMG APLGFPQQDA  240
AATFFIDGDL AGAGETTQAH MPFFDDMGVV SDHELRWDTL PLCTNNAFST TAGAAELWNP  300
VAPNAAAPML CREASDDLAA FFSSLDENNM VVY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B7e-51116012168NAC domain-containing protein 19
4dul_A7e-51116012168NAC domain-containing protein 19
1ut7_B7e-51116012168NO APICAL MERISTEM PROTEIN
1ut7_A7e-51116012168NO APICAL MERISTEM PROTEIN
1ut4_B7e-51116012168NO APICAL MERISTEM PROTEIN
1ut4_A7e-51116012168NO APICAL MERISTEM PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3689850.0AK368985.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2083F05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235019.21e-150PREDICTED: NAC domain-containing protein 72-like
SwissprotA4VCM05e-72NAC45_ARATH; NAC domain-containing protein 45
TrEMBLM8B0620.0M8B062_AEGTA; NAC domain-containing protein 78
STRINGMLOC_58950.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62093854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.17e-83NAC domain containing protein 71